The question of whether Zeref, the powerful dark mage, could see Zera, the illusion created by Mavis Vermilion, is a complex one within the Fairy Tail universe. Zera existed solely within the minds of Mavis and, initially, Yuri Dreyar. This raises the question: could Zeref's immense magical power, which transcends typical limitations, allow him to perceive Zera despite her illusory nature?
While Zeref possesses vast knowledge and abilities, including dabbling in life and death magic, there's no concrete evidence within the series to suggest he could bypass Mavis's deeply ingrained illusion. His interactions with Fairy Tail primarily focus on Mavis herself and his goal related to END.
Ultimately, the answer remains ambiguous. While Zeref's power is extraordinary, Zera's existence as a construct of Mavis's magic, contained within a specific mental realm, might have been beyond even his perception. Perhaps, if Zera directly interacted with him or threatened his plans relating to Mavis, he *might* have been able to sense something amiss, but lacking such interactions, Zera likely remained invisible to him.